gitlab.pasteur.fr
bneron/craw
Compute RNA expression around a reference position
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
bruker/centos7
TopSpin on CentOs-7
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
haisslab/data-management/ONE
One is the interaction layer between the Alyx database (metadatas) and your programmatic interface (python).
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
iah-public/invert-transform-bunwarpj
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
statistical-genetics/PaintorPrep
scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bia/tensorflow-manager
The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
adavidov/inferencelnakf
Parameter inference using filtered linear noise approximation algorithm for likelihood calculation.
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
tru/singularity-docker-busybox
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bia/mice-profiler-tracker
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bia/rsyntaxtextarea-for-icy
RSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
tru/ISB2019
EMBO Course on Integrative Structural Biology 2019 http://meetings.embo.org/event/19-structural-biology
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bia/jama-for-icy
Jama Matrix Package library for Icy
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bia/icy-insubstantial
Insubstantial project (https://github.com/Insubstantial) clone for Icy (fixes + minors customizations). Previous version of the repository can be found at https://github.com/Icy-imaging/Icy-Insubstantial
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
dbikard/badSeed_public
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
statistical-genetics/jass_suite_pipeline
A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute: - clean and harmonize data with jass_preprocessing - if specified impute data with RAISS - create input data for JASS - analyse group of trait with jass
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 1
tru/BGA2019
Bioinformatics and Genome Analyses 2019 - http://meetings.embo.org/event/19-genome-analyses Program at https://webext.pasteur.fr/tekaia/BCGA2019/BCGA2019_Prog.html Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bli/qaf_demux
Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
gmillot/little_bash_functions
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bia/matlab-communicator
Low-level functions for interactive communication between Icy and Matlab.
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
statistical-genetics/manocca
MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
aaristov/multichip-snakemake
Process the droplet chips using snakemake pipelines.
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bia/apache-commons-lang
The Apache Commons Lang Library for Icy
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
hub/PHINDaccess_FUNOMICs
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
haisslab/analysis-packages/how-to-start
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
tru/micromamba-py310-pytorch-cuda11.7
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bli/libdeseq
Some helpers to call DESeq2 using rpy2 in python.
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
hmenager/django-diu
Django Data Import Utilities
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 1
gmillot/slivar_vcf_extraction
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
iah-public/2d-frames-registration-with-bunwarpj
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0
gmillot/cnr_curation
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 2 - Forks: 1
svolant/ptc-screening
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
ida-public/zellige-core
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 3 - Forks: 1
plechat/KronaR
add Krona to Shiny
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 1
mdm-lab/defense-finder-wiki
Defense Finder is a tool that automatically detect known defense systems in prokaryotic genomes. The Defense Finder Wiki aims at gathering and synthesize scientific knowledge regarding defense systems.
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
tru/miniconda3-python310-pytorch-cuda11.7-nightly
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
rchikhi_pasteur/erc-unitigs-poc
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 2
tru/singularity-miniconda3-jupyter
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
tru/catgumag-alphafold
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mmmi-pasteur/covid19-departmental-model
Repository containing data for the paper by Paireau et al. "Impact of non-pharmaceutical interventions, weather, vaccination, and variants on COVID-19 transmission across departments in France"
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
rchikhi_pasteur/serratus-palmfold
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
bia/matlab-importer
Import Matlab *.mat files as sequences in Icy
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
tru/masterclass-22-17
PLUMED Masterclass 22.17
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
clinhard/GeneAppliGitLab
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mgarcia/Core-Genome-EPA
Project Testing for the Core-Genome EPA scripts Checking for problems with dependencies, code bugs, and other problems that might have been unseen
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0
tru/miniconda3-python310-pytorch-cuda11.7
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
dbikard/genomenotebook
Last synced at: about 1 year ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
hub/shiny-k8s
https://hub.pages.pasteur.fr/shiny-k8s/
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mmmi-pasteur/wallisandfutuna
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
iah-public/20241008_remote_python_bioimage_analysis_course_day2
Remote bio-image analysis course with python. Website: https://iah-public.pages.pasteur.fr/20241008_remote_python_bioimage_analysis_course_day2
Last synced at: 8 months ago - Stars: 0 - Forks: 0
iah-public/TrackingPerformance
Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics. I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mdm-lab/website
[](https://archive.softwareheritage.org/browse/origin/?origin_url=https://gitlab.pasteur.fr/mdm-lab/website)
Last synced at: 8 months ago - Stars: 1 - Forks: 0
nyx/MaggotUBA-adapter
Interface between MaggotUBA and the Nyx tagging UI
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
haisslab/analysis-packages/Inflow
General python code for analysis pipeline
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
iah-public/hpyloridegradosomeanalysis
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
iah-public/CellContactAnalyzer
A Fiji tool to detect, track and analyze cell-to-cell contacts. First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
ida-public/dnabarcodecompatibility
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
ida-public/musical-success
Billboard 200: The lessons of musical success in the US
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
hub/django-autocomplete-multi-models
An app that index word used in text field across multiple model, and expose them to be searched.
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mmmi-pasteur/covidonneur
Codes and Data for the paper “SARS-CoV-2 IgG seroprevalence surveys in blood donors before the vaccination campaign, France 2020-2021”.
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mmmi-pasteur/sars-cov-2-epidemics-in-partially-vaccinated-populations
Repository containing code and data for the paper by Bosetti et al. "Epidemiology and control of SARS-CoV-2 epidemics in partially vaccinated populations: a modeling study applied to France"
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mmmi-pasteur/covidvaccinationstrategies-france
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
haisslab/projects_analyses/notebook_tutorials
Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
iah-public/ltravier_brain-ventricles-volume-measurement
Last synced at: 8 months ago - Stars: 0 - Forks: 0