forgemia.inra.fr / urgi-anagen 7 Dépôts
Groupe rassemblant les membres de l'équipe analyse des génomes de l'URGI
urgi-anagen/panREPET
panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.
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urgi-anagen/event_caulifinder
Caulifinder : a pipeline for automatic detection and annotation of caulimovirid endogenous viral elements in plant genomes
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urgi-anagen/te_finder
A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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urgi-anagen/wiki-repet
wiki for REPET usage
dernière synchronisation: il y a plus d'un an - enregistré: il y a environ 2 ans - étoiles: 0 - forks: 0
urgi-anagen/panTEannot
panTEannot serially annotates transposable elements from multiple genomes using a common reference library. The annotation is a light version of TEannot from REPET package. These annotations can be used as input for the panREPET tool.
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urgi-anagen/caulifinder_docker
In frame of EVENT project, all code to build a docker image for the Caulifinder tool. It allows discovering Caulimoviridae sequences in plant genomes.
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