genotoul-bioinfo/metagwgs

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

Last synced at: 6 months ago - Stars: 9 - Forks: 2

genotoul-bioinfo/use-nextflow-nfcore-course

Cours accessible à https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/

Last synced at: 6 months ago - Stars: 4 - Forks: 1

genotoul-bioinfo/pangenome_hackathon

Last synced at: 8 months ago - Stars: 1 - Forks: 0

genotoul-bioinfo/ngspipelines

NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/ng6

nG6

Last synced at: 6 months ago - Stars: 5 - Forks: 0

genotoul-bioinfo/metagwgs-test-datasets

Repository containing input and output datasets to perform tests on metaGWGS

Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 1 - Forks: 0

genotoul-bioinfo/mixKernel

mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel

Last synced at: 6 months ago - Stars: 1 - Forks: 0

genotoul-bioinfo/dgenies-docker

Docker files to test and deploy dgenies

Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/tips-for-sustainable-computing

Provide tips to the platform users to use less resources.

Last synced at: 8 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 1

genotoul-bioinfo/dgenies

Dotplot large Genomes in an Interactive, Efficient and Simple way

Last synced at: 6 months ago - Stars: 3 - Forks: 0

genotoul-bioinfo/jflow

We introduce jflow, a Workflow Management System (WMS), composed of Jquery plugins which can easily be embedded in any WEB application and a Python library providing all requested features to setup, run and monitor workflows.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/jflow-toolshed

Last synced at: 6 months ago - Stars: 1 - Forks: 0

genotoul-bioinfo/ncrna-clust

Last synced at: 6 months ago - Stars: 0 - Forks: 1

genotoul-bioinfo/miniannotator

Last synced at: 6 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/jvenn

jvenn is a plug-in for the jQuery Javascript library. It is a flexible tool, based upon the venny tool first developed by J.C Oliveros (Oliveros, J.C (2007) VENNY, An integrative tool for comparing lists with Venn Diagrams).

Last synced at: 6 months ago - Stars: 1 - Forks: 1

genotoul-bioinfo/srna-tabac

This project is dedicated to targets prediction of bacterial non-coding RNA and their visualisation through a web interface.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/pyrocleaner

The pyrocleaner is intended to clean the reads included in the sff file in order to ease the assembly process.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/tSNPannot

The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.

Last synced at: 6 months ago - Stars: 0 - Forks: 0

genotoul-bioinfo/dgenies-viewer

A viewer using D-Genies

Last synced at: 6 months ago - Stars: 0 - Forks: 0