forgemia.inra.fr / flomics / rflomics
Package R with a shiny interface to run an interactive differential gene/region expression analysis.
JSON API: https://ecosystem.code.gouv.fr/api/v1/hosts/forgemia.inra.fr/repositories/flomics%2Frflomics
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Dependencies parsed at:
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Created at: about 6 years ago
Updated at: 7 months ago
Last synced at: 6 months ago
DESCRIPTION
cran
- MultiAssayExperiment * depends
- R >= 4.4.0 depends
- SummarizedExperiment * depends
- knitr * depends
- shinyBS * depends
- AnnotationDbi * imports
- ComplexHeatmap * imports
- DT * imports
- EnhancedVolcano * imports
- FactoMineR * imports
- MOFA2 * imports
- RColorBrewer * imports
- S4Vectors * imports
- UpSetR * imports
- circlize * imports
- clusterProfiler * imports
- coseq * imports
- data.table * imports
- dplyr * imports
- edgeR * imports
- enrichplot * imports
- ggplot2 * imports
- ggpubr * imports
- ggrepel * imports
- grDevices * imports
- grid * imports
- gridExtra * imports
- htmltools * imports
- httr * imports
- limma * imports
- magrittr * imports
- methods * imports
- mixOmics * imports
- pathview * imports
- png * imports
- purrr * imports
- reshape2 * imports
- reticulate * imports
- rmarkdown * imports
- shiny * imports
- shinyWidgets * imports
- shinydashboard * imports
- stats * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- tidyselect * imports
- utils * imports
- vroom * imports
- BiocStyle * suggests
- org.At.tair.db * suggests
- org.Hs.eg.db * suggests
- testthat * suggests
Dockerfile
docker
- rocker/r-ver 4.4.0 build