forge.ird.fr / phim / cunnac / genomicsr
A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)
JSON API: https://ecosystem.code.gouv.fr/api/v1/hosts/forge.ird.fr/repositories/phim%2Fcunnac%2Fgenomicsr
Stars: 0
Forks: 0
Open issues:
License: mit
Language:
Dependencies parsed at:
60
Created at: over 3 years ago
Updated at: 9 months ago
Pushed at: 12 months ago
Last synced at: 8 months ago
DESCRIPTION
cran
- R >= 3.6.3 depends
- BSgenome * imports
- BiocParallel * imports
- Biostrings * imports
- DECIPHER * imports
- DESeq2 * imports
- Fragman * imports
- GenomicAlignments * imports
- GenomicFeatures * imports
- GenomicRanges * imports
- IRanges * imports
- RColorBrewer * imports
- Rsamtools * imports
- ShortRead * imports
- XVector * imports
- ape * imports
- aplot * imports
- arrow * imports
- biomartr * imports
- cli * imports
- curl * imports
- dichromat * imports
- doFuture * imports
- fs * imports
- furrr * imports
- future.apply * imports
- future.callr * imports
- genbankr * imports
- ggbio * imports
- ggtree * imports
- ggvis * imports
- glue * imports
- gplots * imports
- karyoploteR * imports
- logger * imports
- magrittr * imports
- msa * imports
- odbc * imports
- optparse * imports
- pals * imports
- plyr * imports
- plyranges * imports
- readr * imports
- rentrez * imports
- reshape2 * imports
- reticulate * imports
- rjson * imports
- rtracklayer * imports
- scales * imports
- srnadiff * imports
- systemPipeR * imports
- taxize * imports
- tidyverse * imports
- yaml * imports
- DT * suggests
- countrycode >= 1.3.1 suggests
- devtools * suggests
- knitr * suggests
- pak * suggests
- rmarkdown * suggests