gitlab.pasteur.fr
bia/nherve-image-analysis
A toolbox to chain image analysis processes
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/linear-programming
A open-source utility library for linear programming in Java with the simplex algorithm.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bli/gtf2attr
Small Haskell utility that extracts an attribute from gtf data.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0
track-analyzer/track-analyzer
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/convexify
Creates convex versions of regions of interests in 2D or 3D using the QuickHull library.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/3d-mesh-roi
SDK for 3D ROI creation and manipulation using polygonal (surface) and polyhedral (volume) meshes.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bli/libclusterseq
Utilities to cluster sequences.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tobadia/serosars
Sero-prevalence estimates for human coronaviruses
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/metrolospim
MetroloSPIM plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
ifilella/TssKGinterface
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
rchikhi_pasteur/serratus-batch-assembly
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
dbikard/ecocg
The impact of genetic diversity on gene essentiality within the E. coli species
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
sincobe/brain-motifs
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/c7-conda-lgarciac-cuda101
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
aperrin/curation_tool
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
gmillot/anova_contrasts
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/fft
Fast Fourier Transform Plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
aaristov/nd2shrink
compress nd2 files
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/roi-inclusion-analysis
ROI Inclusion Analysis plugin for Icy.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bli/paraccumulators
Some experiments with parallel and functional programming.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/spot-tracking-blocks
Spot Tracking Blocks plugin for Icy. This plugin brings Spot Tracking tools into Protocols (Graphical Programming)
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/spot-tracking
Spot Tracking plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
bia/sequence-blocks
Sequence blocks plugin for Icy. This plugin deliver a set of Sequence tools to be used with Protocols (Graphical Programming).
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
statistical-genetics/j2s
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
kubernetes-workshop/python-django-template
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 15
GIPhy/Gklust
Fast greedy clustering of genomes based on minhash similarity
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
galaxy-team/galaxy-tools
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 2
bli/snakemake_wrappers
Some wrappers for my snakemake HTS pipelines
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
hub-courses/python_one_week_4_biologists_solutions
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
hmenager/galaxy-cwl-is-docker
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bli/ricochet-ocaml
Modeling ricochet robot in OCaml
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
gmillot/12231_rogge
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
bia/blockvars
This project contains icy utilitary var classes to help protocol creation.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
smukherj/image-analysis-toolkit
General purpose image analysis filters in python
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
hjulienn/publi_test
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/slic
SLIC: Simple Linear Iterative Clustering An Icy plugin implementing this popular segmentation technique
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
hub-courses/R_pasteur_phd
Course material for the part about R and RStudio of the PhD course.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0
dbikard/dCas9_genome_wide_screen
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/wellPlateReader
description
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
gmillot/debugging_tools_for_r_dev
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
aghozlan/mbma_nextflow
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Openshift_public/s2i-scripts
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Openshift_public/docker_images
Images docker openshift ready
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
dmonet/CDP6-Deliverable
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
statistical-genetics/jass_preprocessing
Script to pre-process GWAS inputs
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
GIPhy/Concatenate
Building a supermatrix of characters from a set of multiple sequence alignments
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
pmaloux/Collecteur_Gilson
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/ISB2017
Pasteur Course on Integrative Structural Biology (ISB2017)
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
mborry/coGSEA_SetRank
coGSEA with the SetRank Method
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/docker-alpine-ci
building an alpinelinux docker image for CI
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
inception-gpulab/wiki
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
bougui/chimera_javascript
Displaying Interactive 3D Model Views in Web Browsers using chimera (see: https://www.cgl.ucsf.edu/Outreach/technotes/globeview/)
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0
TMENARD_PUBLIC/alerta-docker
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/centos-pasteur
random files to ease the use of CentOS locally
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
aghozlan/blast_approach
Blast approach is aimed to annotate a metagenomic sequencing using an approach mostly based on blast.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0
tru/singularity-bootstrap
Singularity bootstrap files
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
plechat/treeWeightD3
display a weight tree with D3 in R
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
hmenager/bioweb
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
plechat/PhyloTreeMetaR
Phylocanvas to R
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1
mlegras/slitherine
pipeline nextflow
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/docker-archlinux-ci
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bougui/NRGXL
Compute cross-linkers conformations and energies in proteins
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
TMENARD_PUBLIC/oak-diagtool
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/spot-detector
Spot detector plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
tru/singularity-docker-matlab-r2022a
docker and singularity containers for official matlab R2022a
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/singularity-lts20.04-ci
# building an Ubuntu LTS 20.04 singularity image for CI
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
aghozlan/measles
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
gmillot/homopolymer
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
vlegrand/FQreport
Estimating standard descriptive statistics from FASTQ file
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
csaveanu/lyx-and-latex-templates
Lyx or LaTex templates or code that could be useful for editing documents.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
mahaudiq/mh-website
My website
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/workspace-editor
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/tracking-benchmark-generator
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/icy-bioformats
Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
nyx/larvatagger.jl
2D viewer for behaving larvae, with manual and automatic behavior tagging capabilities
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bbrancot/moodle-saml-2-mwe
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
hub/rnaflow
HUB transcriptomic snakemake pipeline
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0
GIPhy/BMGE
Block Mapping and Gathering with Entropy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/intensity-projection
Intensity projection plugin. It does intensity project along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, saturated sum. Projection can also be restricted to ROI.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
metagenomics/fastgenes
From experiences acquired developing https://gitlab.pasteur.fr/metagenomics/metagenedb, create a light version of it with FastAPI as a backend and SQLModel as ORM
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/icy-random-roi-coloring
A simple plugin to randomly assign colors to ROIs in sequences. Also available for protocols
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
csaveanu/gim-interactions-2021
Source of the shiny server that presents results obtained by large scale double mutant yeast screens (GIM): http://hub05.hosting.pasteur.fr/GIM_interactions/
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
gmillot/14985_loot
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
hub-courses/scientific_python
scientific python course given in 2021
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0
tru/docker-c7-miniconda-pytorch-cuda10.2-ci
building a pytorch-cuda10.2 miniconda image based on centos7 for CI
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/docker-c7-miniconda-tf-gpu-ci
# building a tensorflow-gpu miniconda image based on centos7 for CI
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/docker-c7-miniconda-ci
building a miniconda image based on centos7 for CI
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0