gitlab.pasteur.fr
tru/singularity-docker-centos6-tensorflow
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tru/docker-centos7-tensorflow
docker image to build tensorflow on CentOS-7 x86_64
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tru/docker-centos6-tensorflow
docker image to build tensorflow on CentOS-6 x86_64
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bli/bioinfo_utils
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
csaveanu/R_snippets
Keeping R and Python specific snippets
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tru/singularity-google-chrome
using Google Chrome with singularity
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aghozlan/rNVD3
Interactive Charts from R using NVD3.js
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statistical-genetics/jass
A web interface for the Joint Analysis of GWAS Summary Statistics.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1
rdenise/diversification-of-tff-sf-data
You can find here the HMM profiles and the macsyfinder models that was used in the paper Diversification of the type IV filament super-family into machines for adhesion, secretion, DNA transformation and motility.
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iah-public/ptrmiad-thomaidou
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stapa/owa-mailinglist-sync
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hub/gender_at_jobim_2021
This repository contains public data and script related to our observation study of gender impact on asking behavior during JOBIM 2021.
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tru/docker-ubuntu-lts18.04-miniconda-ci
building a miniconda minimal image based on Ubuntu LTS 18.04 for CI
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tru/docker-ubuntu-lts18.04-maestro-ci
building a minimal image based on Ubuntu LTS 18.04 for CI (based on the singularity recipe at https://gitlab.pasteur.fr/tru/ubuntu-lts18.04-maestro)
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nmaillet/unix-training
Unix training, from total beginners to advanced users
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bli/plotting_scripts
Some scripts to plot results from my HTS pipelines.
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bio-singularity/SMARTdenovo
SMARTdenovo assembly tool wrapped into a singularity for HPC cluster executions
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hub/openbabel4ippidb
openbabel rpm recipes for iPPI-DB. 2.4.1 is too old and buggy on fingerprints and tanimoto, so until the next release we use custom rpms
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GIPhy/contig_info
Estimating standard descriptive statistics from contig sequences
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GIPhy/wgetGenBankWGS
Downloading genome assembly files from GenBank or RefSeq
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iah-public/localzprojector
Local z-projection via the determination of a plane of reference.
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bio-singularity/miniasm
Singularity to wrap minimap2 and miniasm in order to perform a long read de novo assembly
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hub/MeRIPSeq
MeRIP-Seq pipeline analysis for m6a methylation site detection Author: Christophe Bécavin, Hub Bioinformatic and Biostatistic, Institut Pasteur
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haisslab/analysis-packages/taskflow_jobs
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bis/acarre-envpasteur-micromamba
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bia/icy-bioimage-io-resources
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tru/docker-miniconda3-jupyter
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zolfa/zolfa-nd2reader
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bia/matlab-io
Low-level library for reading and writing Matlab .mat files
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MSBio/TDP_comparative_tools
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BEBP/samestrain-r-package
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hub-courses/unix_tunis
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gem/galopa
The scripts for the GaLoPA pipeline
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tru/alphafold-dialvarezs
https://github.com/dialvarezs/alphafold
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tru/docker-ubuntu-lts18.04-ci
building a ubuntu LTS 18.04 docker image for CI
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bia/msgpack-core
MsgPack Core library for Icy. https://msgpack.org/
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bia/oshi-core-jdk6
The Oshi core library (JDK6) for Icy https://github.com/oshi/oshi
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bia/google-flatbuffers
Google FlatBuffers library for Icy https://github.com/google/flatbuffers
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gmillot/repertoire_analysis
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aaristov/napari-segment
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mbenimam/SplineDist
Pytorch implementation of the Spline dist cell segmentation method
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plechat/covcuration
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GIPhy/GenoMed
Estimating Genome Medoid
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flaurent/tramway-artefacts
Data archives for running TRamWAy notebooks
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tru/docker-c7-miniconda-pytorch-cuda11.3-ci
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GIPhy/SimiPlot
creating figures showing overall similarity between genomes
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tramway/palm-tools
Comparaisons d'ensembles de trajectoires
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bli/genome_preparation
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fmareuil/galaxy-downloader
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tru/singularity-docker-aydin-gpu
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nyx/artefacts
No code here, only artefacts, mostly to feed the CI with data
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gmillot/08002_bourgeron
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mmmi-pasteur/covid19-ensemble-model
Code and data for the article by Paireau et al. "An ensemble model based on early predictors to forecast COVID-19 healthcare demand in France"
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tru/docker-singularity-alpine-ci
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bia/snakeyaml-library
The snakeyaml library available for Icy
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tru/docker-c7-oneapi-basekit-offline
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gmillot/conda_env
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tru/oneapi-hpckit-devel-centos7
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tru/os-tools-centos7
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tru/localcolabfold
Docker build from https://github.com/YoshitakaMo/localcolabfold
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tru/docker-nvidia-cuda11-ci
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BEBP/inheritance-algorithm
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
flaurent/glyb
Recent analyses on Stephanie's data
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tru/alphafold
import from github
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tru/docker-c7-ci
building an centos7 docker image for CI
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tru/ubuntu-lts18.04-maestro
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bia/intensity-profile
A plugin allowing to create a graphic showing the intensity profile of 2D ROIs
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/webcam-capture-example
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bia/track-processor-time-clip
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bia/track-intensity-profile
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GIPhy/wgetENAHTS
Downloading FASTQ files from ENA
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margonza/tac-a5modeling
Share a5 modeling steps for TAC meeting
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bia/roi-proximty-analysis
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/icy/extensions/opencv
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mmmi-pasteur/covid19-guiana
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bia/apache-commons-codec
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abiton/scmce_publi
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bia/color-bar
Display the colormap over the image using an overlay.
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rchikhi_pasteur/serratus-rdrp-analysis
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aghozlan/alientrimmer
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bli/libconsensus
Utilities to make a consensus from a sequence alignment.
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bia/spot-detection-utilities
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bia/roi-pool
Manage a list of ROIs that the user can store and pop back in one click.
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bia/nherve-toolbox
My own toolbox used for all the plugins I developed.
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