gitlab.pasteur.fr
bia/kmeans-color-quantization
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/image-to-workbook
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/microscope-remote
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/detection-to-roi
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/angle-descriptor
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/color-track-processor
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/apache-commons-collections
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/apache-commons-logging
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/well-plate-stitcher
An ICY plugin for stitching the fields presented on well plates
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
kpetrov/metal
metagenomics pipeline on maestro
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/parent-pom-core
Old parent POM for all Icy core related projects (Icy-Kernel and customized libraries used for Icy-Kernel). Now we need to use the POM Icy as unique parent POM file: https://gitlab.pasteur.fr/bia/parent-pom-base
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
rlegendr/rnasig
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/jython-for-icy
Jython library for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/javacl-for-icy
JavaCL library for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
frousset/ecocg
The impact of genetic diversity on gene essentiality within the E. coli species
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
rpellari/ribosome_nnp9
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/roi-tagger
Create a list of tag and apply them to ROIs.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/roi-intensify-evolution
Compute and display the intensity evolution for regions of interests (ROIs) through time. Results can be refreshed automatically as ROIs are changed.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
GIPhy/SAM2MSA
Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/label-extractor
Extracts labeled objects from a binary or labeled image into ROI using connected component analysis
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/autocomplete
Plugin Library used to provide autocompletion to JTextComponents, such as JTextArea or JTextField.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/icy-random-crops
An Icy plugin made for random generation of crops on a given sequence
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
iah-public/DeProj
Deprojection of a 2D segmentation onto a 2.5D mesh
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1
bia/icy-histogram
This Icy plugin allows to compute and display the histogram of a sequence, with a more accurate control on the histogram parameters. It also enables the computation of histograms on ROIs.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
rchikhi_pasteur/serratus-batch-dl
Serratus project, read downloader using AWS Batch
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
rchikhi_pasteur/aws-unitigs
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
ifilella/closeness-metric-data
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tobadia/madang-2020-cohort
Asia-Pacific ICEMER cohort ran in Madang (Papua New-Guinea) in early 2020. The purpose of this repository is to centralize R scripts and developments to streamline the data extraction and analysis.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bli/libriboseq
Miscellaneous stuff to deal with Ribo-seq data.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/distance-transforms
Distance Transforms Plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
GIPhy/MSTclust
Minimum Spanning Tree-based clustering
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/c7-conda-lgarciac-cuda92
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/micro-manager-blocks
Blocks (Protocols) for Micro-Manager plugin
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
dbikard/crisprbact
Tools to design and analyse CRISPRi experiments [](https://badge.fury.io/py/crisprbact)
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
bia/roi-statistics
ROI Statistics plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/track-motion-profiler
Track Motion Profiler plugin for Icy. This plugin adds Motion Profiler and Motion Filter processors to Track Manager.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/track-manager
Track Manager plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
bia/roi-block
ROI blocks plugin for Icy. This plugin deliver a set of ROI tools to be used with Protocols (Graphical Programming).
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/protocols
Protocols (GUI part) plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/ezplug
EzPlug plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/active-contour
Active Contours plugin for Icy
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
bia/icy/icy
Icy is an open community platform for bioimage informatics
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0
tru/PasTeX
Beamer (LaTeX) template really close to the official Pasteur pptx theme
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
gmillot/slitherine
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
tru/python-django-template
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
aghozlan/python-django-template
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
metagenomics/snakemake
Repository for snakemake rules
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bli/libreads
Utilities to make stats and plots from reads.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bli/libsmallrna
Defining small RNAs in C. elegans.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bli/libhts
Some helpers for HTS data analyses.
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
rplanel/bioviz-js
library to visualize biological data: http://rplanel.pages.pasteur.fr/bioviz-js
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bbrancot/django-diu
Django Data Import Utilities
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bbrancot/django-basetheme-bootstrap
A module handling basic fonctionnality needed in django project such as base.html using bootstrap, account settings, preferences management, ...
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/dns-esmmc
/etc/hosts with locally defined aliases
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
cdhumier/phage_isolation_to_bioinformatic_approach
You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tbigot/rvdb-prot
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/randomgenerators
This project is dedicated to protocol blocks generating random objects: - doubles - integers - subimages
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
mwhite/pv_mod
Individual-based model of P. vivax transmission
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
bio-singularity/canu
A wrapper for the canu long read assembly tool
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/AEGIS2018
AEGIS2018 course practical
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
ippidb/ippidb-web
iPPI-DB - django application
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
csaveanu/NMD_complexes_shiny
Sources for the server running at http://hub05.hosting.pasteur.fr/NMD_complexes/ Allows exploration of interactions around NMD complexes (Dehecq et al., EMBOJ 2018)
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/org.bioimageanalysis.icy.surf
Surf feature matching
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
statistical-genetics/raiss
A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
statistical-genetics/runCMS
Pipeline to run CMS in large-scale analyses
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
imod/laser-control-for-quickpalm
Python GUI to control an AOTF.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
qletourn/django_site_madagascar
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/ISB2018
Pasteur Course on Integrative Structural Biology 2018
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
gbussott/Leishmania_genome_dynamics_during_environmental_adaptation_reveals_strain_specific_differences
Supplementary material for the paper: "Leishmania genome dynamics during environmental adaptation reveals strain-specific differences in gene copy number variation, karyotype instability, and telomeric amplification"
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
GIPhy/eFASTA
Extracting a nucleotide segment from a FASTA-formatted file
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
Openshift_public/config-server
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
fkoukoul/CDP6-deliverable
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tmenard/springboot-maven3-centos
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
GIPhy/REQ
Estimating a confidence value at each branch of a phylogenetic tree from a matrix of pairwise evolutionary distances
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
vguillem/template1
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
rpellari/bayesianem-benchmark
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/singularity-skype
Singularity(based on docker://debian) container to run skype
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
pmaloux/Pompe_WPI
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/ISB2016
Insitut Pasteur - Integrative Structural Biology School - 2016
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
vguillem/coGSEA_shiny
Shiny version of coGSEA
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
vguillem/coGSEA
coGSEA
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
mborry/coGSEA_shiny
Shiny version of coGSEA
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
hub-courses/phylogeny-machines
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
mborry/coGSEA
coGSEA
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
aghozlan/shaman_bioblend
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
aperrin/pipeline_annotation
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0
tru/BGA2017
Bioinformatics and Genome Analyses 2017 - http://meetings.embo.org/event/17-genome Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/gitlab-virtualbox-runner
testing a dedicated virtualbox runner for gitlab
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/singularity-docker-centos7-tensorflow
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0