gitlab.pasteur.fr
statistical-genetics/multitrait_power_traitselection
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tglab/gastruloids_precisionandscaling
This will contain the minimal necessary codes to reproduce the image analysis (BF and IF) from the preprint https://arxiv.org/abs/2303.17522
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hub/salin
Scripts to inject attc cassette in genome for Integron_Finder analysis
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GIPhy/HCAP
Cropping reads to reach homogeneous composition among positions
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tramway/tracktor
Webapp pour l'analyse de trajectoires
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hub/absd
AntiBody Sequence Database, a website to easily build a set of antibody chain sequences gathered from different sources. [https://absd.pasteur.cloud/](https://absd.pasteur.cloud/)
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GIPhy/AlienDiscover
Inferring alien oligonucleotides (adapters, primers, ...) from FASTQ file
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haisslab/electronic_designs/mixed_digital_and_analog_gate
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bia/distance-profiler-processor
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bia/rhinoplugin
Rhino Library for Icy
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bia/quickhull
QuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.
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tru/deltaVinaXGB
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hub/shiny-k8s-example
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gmillot/dockerfiles
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bardiaux/blob-analysis-lab-ecole
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bis/acarre-envpasteur
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ida-public/dnabarcodecompatibility_shiny
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iah-public/automated_segmentation_mycobacterium_tuberculosis_snapshots
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tru/singularity-docker-miniconda3-jupyter
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gmillot/genetic_linkage
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bia/connected-components
This plugin extracts groups of connected pixels in 2D and 3D based on their intensity and that of the background. Works on both binary and gray-scale data. Output can be pushed to the swimming pool for other plug-ins to further exploi
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jdreo/frictionlesser
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gmillot/repertoire_profiler
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vguillem/data-integration-with-kernels
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bia/nashorn-for-icy
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amichaut/manipylator
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nyx/maggotuba-core
Public copy of gitlab.pasteur.fr/les-larves/maggotuba#light-stable-for-tagging Courtesy of A. Blanc
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ofourque/mem_python
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bia/jep
Embed CPython in Java through JNI
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bia/matlab-x-server
Use Icy as an image viewer from Matlab
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tru/installing-scipion3-miniconda3
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bia/big-image-tools
Big Image Tools - Read and write large 2D images with Icy
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gmillot/fisher_for_vcf
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bia/jna-library-for-icy
The Java Native Access (JNA) library for Icy https://github.com/java-native-access/jna
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gletort/dextrusion
Automatic detection of epithelial cell events as cell extrusion
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bia/color-picker-threshold
Image segmentation by representative colors selection. Two versions are available : – thresholding – positive and negative colors selection and SVM learning
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bia/ehcache-3
EHCache 3 for Icy https://www.ehcache.org/
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tobadia/17289-zikalliance
This repository is tied to project #17289 submitted by Prof. Anna-Bella Failloux. It will host all the developments around that project to help replicate the results from the article.
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bia/deeplearning4j-for-icy
DeepLearning4J library for Icy. Website: https://deeplearning4j.konduit.ai/ Github: https://github.com/eclipse/deeplearning4j
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GIPhy/MSAshrink
Multiple Sequence Alignment shrinking
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mbenimam/RegionSegmentation
Region segmentation
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aaristov/zarr-tools
Convert nd2 to zarr
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fdepard/alphafold
import from github
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hub/phindaccess_epigenomics
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statistical-genetics/gs_project_template
A cookie cutter for the genetic statistics unit
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GIPhy/GenoLayout
Creating figures showing linear maps between genomes
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tru/docker-c7-miniconda-pytorch-cuda11.3-jupyter-ci
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nyx/TaggingBackends
Backbone for automatic tagging backends; includes a Python implementation of PlanarLarvae.jl features and the Julia-Python communication layer
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GIPhy/OGRI
Estimating pairwise OGRIs between genomes (ANI, AAI, POCP, ...)
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bli/libcodonusage
Python utilities to deal with codon usage.
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statistical-genetics/hgcovid_imputation
Simulation study to determine the impact of summary statistic imputation on a meta-analysis
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kdruart/extract_uniprot_XML
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csaveanu/yeast-transcripts
A collection of resources on yeast transcript annotations, based on published results.
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tru/buildah-busybox
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hverdier/gratin-fbm
version of gratin adapted for inference of fBM properties
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tru/pas-te-x-jdreo
Beamer (LaTeX) template really close to the official Pasteur pptx theme
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gmillot/subtitle_time_shift
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tru/singularity-docker-cellpose
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tru/singularity-alpine-ci
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bia/tensorflow-1-interface
This library contains the functions to convert TensorFlow 1 tensors into Icy sequences and viceversa. This library is compatible with TensorFlow versions up to 1.15
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gmillot/nf_column_reordering
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pfccb/cytokinesis
This Icy bioimage analysis plugin was developped to help biologists detect late cytokinetic bridges on static immunofluorescence images.
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tru/conda-container-howto
Walkthrough from a conda command line installation to a container (docker or singularity) for maestro, Inception gpulab, reproduceable, sharing among colleagues. Work in progress.
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tru/conda-scikit-fda
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tru/oneapi-basekit-devel-centos7
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tru/alphafold-github
Open source code for AlphaFold.
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bia/apache-commons-csv
Icy wrapper for the Apache Commons CSV library.
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bia/gson
Gson library plugin for Icy
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margonza/tac-genmolai
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GIPhy/fastq_info
Estimating standard descriptive statistics from FASTQ files
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plechat/snpviewer
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bia/webcam-capture-library
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bia/isotropic-wavelet
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bia/stereo-vtk-canvas
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bia/msd-track-processor
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bia/math-operations-pp
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