gitlab.pasteur.fr
iah-public/clostridioides-difficile-binary-toxin-cdt-induces-biofilm-like-persisting-microcolonies
Python code for the image analysis performed for the paper "Clostridioides difficile binary toxin CDT induces biofilm-like persisting microcolonies" J. MEZA TORRES et al.
Last synced at: 8 months ago - Stars: 0 - Forks: 0
iah-public/nuclei-identification-in-cells-infected-by-chlamydia
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
ida-public/amplitudes_latencies_ui
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 3
hub/django-biodblinks
BioDBLinks is a Django app to help connect bio-related django-based databases with other existing references databases.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/icy-BUnwarp
B-spline registration adaptation for ICY based on BunwarpJ plugin from ImageJ
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/javacpp-library
The Bytedeco JavaCPP library for Icy https://github.com/bytedeco/javacpp
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/clipper
Clipper - A polygon clipping library
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bia/track-processor-excel-export
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/track-intensity-profile-lagache
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
GIPhy/AlienTrimmer
Fast trimming of sequencing reads
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GIPhy/FASTA2AGP
Creating an AGP file from a FASTA-formatted scaffold sequence file
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Openshift_public/spring-boot-admin
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nyx/planarlarvae.jl
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bia/timestamp-overlay
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/path-intensity-profil
Compute the intensity profile of ROI contour along Z (3D) and T (timelaps) dimension. Generates a workbook document containing all the intensity values for each point of the contour, can be plotted as graph or exported as CSV
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machine-learning/Wiki
Wiki to share auto-formation ressources on machine learning
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bio-singularity/quast
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
mmmi-pasteur/monitoring-infection
Repository containing scripts and data for the paper "Hozé et al., Lancet Public Health, Monitoring the proportion of the population infected by SARS-CoV-2 using age-stratified hospitalisation and serological data: a modelling study"
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/matlab-exporter
Export sequences from Icy to Matlab *.mat files
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/google-gson
Google Gson library for Icy : https://github.com/google/gson
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bia/spot-detector-block
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
statistical-genetics/VarExp
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bia/apache-xmlbeans
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
gem/capsuledb
couchapp and input data parser to create capsuledb
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
GIPhy/RepeatPlot
creating figures that represent the positions of long repeats in a chromosome
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GIPhy/DNA2ORF
Translating the maximum number of codons using the minimum number of ORFs
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GIPhy/YACO
Yet Another Contig Ordering
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GIPhy/JolyTree
Fast distance-based phylogenetic inference from unaligned genome sequences
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gem/Core-Genome-EPA
Project Testing for the Core-Genome EPA scripts Checking for problems with dependencies, code bugs, and other problems that might have been unseen
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
gem/spot_ICE
script that makes a visual representation of a spot containing ICE.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
GIPhy/SWANI
Smith-Waterman-based Average Nucleotide Identity
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GIPhy/eCDS
Extracting CDS from contig sequences
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GIPhy/fq2dna
Genome de novo assembly from raw paired-end FASTQ files
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GIPhy/fqCleanER
Preprocessing FASTQ files
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GIPhy/AlienRemover
Fast removal of contaminating reads from FASTQ file(s)
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GIPhy/gbk2ENA
Converting Genbank files into EMBL-like files suitable for submission to ENA
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GIPhy/C2A.A2C
Translating and back-translating codon and amino-acid sequence files
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metagenomics/metagenedb
Django based project to build metagenomics genes catalog
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
bia/parent-pom-base
Common parent POM for all Icy related projects
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bia/javadocparser
A tool to parse the javadoc of a file. Mostly used now by the Script Editor.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/java3d-for-icy
Java3D library for Icy
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bia/texture-segmentation
It is a toy plugin to test semi-supervised texture segmentation using the new SLBPriu texture descriptor.
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bia/workbooks
Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
bia/plugin-template
Template to create new Icy plugin (POM file and base plugin class)
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gmillot/cute_little_R_functions
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 3
aghozlan/mbma_singularity
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
jsousa/eVIVALDI
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
rpellari/recursive-gmconvert
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
rpellari/bayesianem
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
fallain/gitlab_tuto
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/docker-centos6-bazel
CentOS-6 x86_64 cocker image for bazel
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fallain/thesis_template
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gem/ICE_CP
Data and script for the paper on ICE vs CP
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/dot_files
my . * files
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nmaillet/PasTeX
Beamer (LaTeX) template really close to the official Pasteur pptx theme
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 2
csaveanu/lilams-archive
LILAMS - Leucine Isotopic Labeling Analysis by MALDI-TOF mass Spectrometry was a Python software project to perform quantitative data analysis on mass spectrometry results for proteins labeled with heavy amino acids. Historical archive.
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bia/global-visible-persistence
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
BEBP/samestrain
http://hub05.hosting.pasteur.fr/aduval/SimulPopB_shiny/
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mmmi-pasteur/agedynamics_sarscov2
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
vguillem/saber_report_html
An R package that, once installed, allows one to create an R Markdown document from a template defined by the SABER group
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
tru/docker-c7-miniconda-pytorch-cuda11.1-ci
building a pytorch-cuda11.1 miniconda image based on centos7 for CI
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tobadia/pvserotat-rshiny-app
Git repository to host The PvSeroTAT RShiny app. This app provides a user-friendly interface to apply classification algorithms to detect recent infections by _Plasmodium vivax_, as detailed in the recent paper by Longley _et al._ (https://doi.org/10.1038/s41591-020-0841-4)
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
bis-aria/ariaec
Evolutionary Contact wrapper for ARIA software
Last synced at: 8 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
rpellari/bayesianem-exosome
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
vlegrand/ptv
This project contains the latest PhageTerm software source repository (multi machine version).
Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
mmmi-pasteur/influenza-modified-filter
Code and data for the article "Integrating information from historical data into mechanistic models for influenza forecasting" by Alessio Andronico, Juliette Paireau and Simon Cauchemez
Last synced at: 8 months ago - Stars: 0 - Forks: 0
GIPhy/LINtree
building prefix tree from LIN codes
Last synced at: 8 months ago - Stars: 0 - Forks: 0
bia/imglib2-icy
imglib2-icy ImgLib2 wrappers for Icy.
Last synced at: 8 months ago - Stars: 0 - Forks: 0