gitlab.pasteur.fr
nmaillet/PasTeX
Beamer (LaTeX) template really close to the official Pasteur pptx theme
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 2
hub/rnaflow
HUB transcriptomic snakemake pipeline
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 0
hub-courses/scientific_python
scientific python course given in 2021
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0
ida-public/zellige-core
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 1
bia/icy/icy
Icy is an open community platform for bioimage informatics
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
aperrin/pipeline_annotation
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
gmillot/cnr_curation
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1
gem/spot_ICE
script that makes a visual representation of a spot containing ICE.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bli/bioinfo_utils
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
jdreo/frictionlesser
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/workbooks
Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/tensorflow-manager
The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/track-manager
Track Manager plugin for Icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
jgugliel/wgrr
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/spot-detector
Spot detector plugin for Icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/hk-means
HK-Means plugin for Icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
iah-public/2d-frames-registration-with-bunwarpj
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/script-editor
Script Editor plugin for Icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
nmaillet/rpg
Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-induced cleavage sites on amino acid sequences. https://rapid-peptide-generator.readthedocs.io
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bneron/craw
Compute RNA expression around a reference position
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
iah-public/ptrmiad-thomaidou
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
mdm-lab/website
[](https://archive.softwareheritage.org/browse/origin/?origin_url=https://gitlab.pasteur.fr/mdm-lab/website)
Last synced at: over 1 year ago - Stars: 1 - Forks: 0
bia/active-contour
Active Contours plugin for Icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/parent-pom-base
Common parent POM for all Icy related projects
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/snakeyaml-library
The snakeyaml library available for Icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bis-aria/ariaec
Evolutionary Contact wrapper for ARIA software
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
gletort/dextrusion
Automatic detection of epithelial cell events as cell extrusion
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
bia/tensorflow-1-interface
This library contains the functions to convert TensorFlow 1 tensors into Icy sequences and viceversa. This library is compatible with TensorFlow versions up to 1.15
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/plugin-template
Template to create new Icy plugin (POM file and base plugin class)
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
dbikard/crisprbact
Tools to design and analyse CRISPRi experiments [](https://badge.fury.io/py/crisprbact)
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
hub-courses/phylogeny-machines
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
statistical-genetics/jass
A web interface for the Joint Analysis of GWAS Summary Statistics.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
bli/plotting_scripts
Some scripts to plot results from my HTS pipelines.
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
gmillot/12231_rogge
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
plechat/PhyloTreeMetaR
Phylocanvas to R
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1
bia/icy-bioformats
Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
iah-public/invert-transform-bunwarpj
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
mouselab/stuart
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
iah-public/DeProj
Deprojection of a 2D segmentation onto a 2.5D mesh
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
GIPhy/wgetENAHTS
Downloading FASTQ files from ENA
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/wellPlateReader
description
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bia/spot-tracking
Spot Tracking plugin for Icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
nmaillet/unix-training
Unix training, from total beginners to advanced users
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
plechat/KronaR
add Krona to Shiny
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1
inception-gpulab/wiki
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
mwhite/pv_mod
Individual-based model of P. vivax transmission
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
hub/PHINDaccess_FUNOMICs
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/apache-commons-lang
The Apache Commons Lang Library for Icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/rsyntaxtextarea-for-icy
RSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/graaljs-for-icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
rchikhi_pasteur/serratus-palmfold
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/draw-sphere-vtk
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/matlab-importer
Import Matlab *.mat files as sequences in Icy
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
tru/af2complex
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
jdreo/paradiseo
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
mmmi-pasteur/covid19-departmental-model
Repository containing data for the paper by Paireau et al. "Impact of non-pharmaceutical interventions, weather, vaccination, and variants on COVID-19 transmission across departments in France"
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
tru/catgumag-alphafold
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
aaristov/multichip-snakemake
Process the droplet chips using snakemake pipelines.
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/mice-profiler-tracker
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
tru/singularity-miniconda3-jupyter
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
rchikhi_pasteur/erc-unitigs-poc
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 2
statistical-genetics/manocca
MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
tru/miniconda3-python310-pytorch-cuda11.7-nightly
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
mdm-lab/defense-finder-wiki
Defense Finder is a tool that automatically detect known defense systems in prokaryotic genomes. The Defense Finder Wiki aims at gathering and synthesize scientific knowledge regarding defense systems.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/matlab-communicator
Low-level functions for interactive communication between Icy and Matlab.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
tru/singularity-docker-busybox
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
gmillot/little_bash_functions
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
hub/viralhostrangedb
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1
bli/qaf_demux
Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/channel-montage
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/roi-to-detection
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
haisslab/data-management/ONE
One is the interaction layer between the Alyx database (metadatas) and your programmatic interface (python).
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
svolant/ptc-screening
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
tru/BGA2019
Bioinformatics and Genome Analyses 2019 - http://meetings.embo.org/event/19-genome-analyses Program at https://webext.pasteur.fr/tekaia/BCGA2019/BCGA2019_Prog.html Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html
Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
mmmi-pasteur/sars-cov-2-epidemics-in-partially-vaccinated-populations
Repository containing code and data for the paper by Bosetti et al. "Epidemiology and control of SARS-CoV-2 epidemics in partially vaccinated populations: a modeling study applied to France"
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
mmmi-pasteur/covidonneur
Codes and Data for the paper “SARS-CoV-2 IgG seroprevalence surveys in blood donors before the vaccination campaign, France 2020-2021”.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
hub/django-autocomplete-multi-models
An app that index word used in text field across multiple model, and expose them to be searched.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
hub/BioinfOMICs
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
statistical-genetics/jass_suite_pipeline
A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute: - clean and harmonize data with jass_preprocessing - if specified impute data with RAISS - create input data for JASS - analyse group of trait with jass
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1
mmmi-pasteur/covidvaccinationstrategies-france
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/kinect-driver
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/jfree-common
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bia/cs-denoising
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
ida-public/musical-success
Billboard 200: The lessons of musical success in the US
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
haisslab/projects_analyses/notebook_tutorials
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
iah-public/ltravier_brain-ventricles-volume-measurement
Last synced at: over 1 year ago - Stars: 0 - Forks: 0
iah-public/clostridioides-difficile-binary-toxin-cdt-induces-biofilm-like-persisting-microcolonies
Python code for the image analysis performed for the paper "Clostridioides difficile binary toxin CDT induces biofilm-like persisting microcolonies" J. MEZA TORRES et al.
Last synced at: over 1 year ago - Stars: 0 - Forks: 0
