gitlab.pasteur.fr
kubernetes-workshop/python-django-template
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gmillot/cute_little_R_functions
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ida-public/amplitudes_latencies_ui
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nmaillet/PasTeX
Beamer (LaTeX) template really close to the official Pasteur pptx theme
Last synced at: about 2 years ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 2
rchikhi_pasteur/erc-unitigs-poc
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galaxy-team/galaxy-tools
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vlegrand/ptv
This project contains the latest PhageTerm software source repository (multi machine version).
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tru/conda-container-howto
Walkthrough from a conda command line installation to a container (docker or singularity) for maestro, Inception gpulab, reproduceable, sharing among colleagues. Work in progress.
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metagenomics/metagenedb
Django based project to build metagenomics genes catalog
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gletort/dextrusion
Automatic detection of epithelial cell events as cell extrusion
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hub/viralhostrangedb
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hub-courses/unix_tunis
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dbikard/ecocg
The impact of genetic diversity on gene essentiality within the E. coli species
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iah-public/DeProj
Deprojection of a 2D segmentation onto a 2.5D mesh
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statistical-genetics/jass_suite_pipeline
A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute: - clean and harmonize data with jass_preprocessing - if specified impute data with RAISS - create input data for JASS - analyse group of trait with jass
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gmillot/debugging_tools_for_r_dev
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ida-public/zellige-core
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mborry/coGSEA_shiny
Shiny version of coGSEA
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statistical-genetics/jass
A web interface for the Joint Analysis of GWAS Summary Statistics.
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gmillot/slitherine
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bia/plugin-template
Template to create new Icy plugin (POM file and base plugin class)
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gmillot/dockerfiles
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mborry/coGSEA
coGSEA
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jsousa/eVIVALDI
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gmillot/cnr_curation
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hmenager/django-diu
Django Data Import Utilities
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tru/alphafold
import from github
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statistical-genetics/runCMS
Pipeline to run CMS in large-scale analyses
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bia/rsyntaxtextarea-for-icy
RSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.
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bia/apache-commons-lang
The Apache Commons Lang Library for Icy
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bia/tensorflow-manager
The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime
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bia/draw-sphere-vtk
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aaristov/multichip-snakemake
Process the droplet chips using snakemake pipelines.
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bia/mice-profiler-tracker
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statistical-genetics/manocca
MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.
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bia/matlab-communicator
Low-level functions for interactive communication between Icy and Matlab.
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tru/singularity-docker-busybox
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bia/roi-to-detection
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bli/qaf_demux
Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.
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haisslab/data-management/ONE
One is the interaction layer between the Alyx database (metadatas) and your programmatic interface (python).
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bia/watershed-3d
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svolant/ptc-screening
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haisslab/projects_analyses/notebook_tutorials
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gmillot/little_bash_functions
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bia/channel-montage
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mdm-lab/defense-finder-wiki
Defense Finder is a tool that automatically detect known defense systems in prokaryotic genomes. The Defense Finder Wiki aims at gathering and synthesize scientific knowledge regarding defense systems.
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tru/miniconda3-python310-pytorch-cuda11.7-nightly
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tru/singularity-miniconda3-jupyter
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tru/catgumag-alphafold
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mmmi-pasteur/covid19-departmental-model
Repository containing data for the paper by Paireau et al. "Impact of non-pharmaceutical interventions, weather, vaccination, and variants on COVID-19 transmission across departments in France"
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rchikhi_pasteur/serratus-palmfold
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bia/graaljs-for-icy
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bia/matlab-importer
Import Matlab *.mat files as sequences in Icy
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tru/af2complex
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hub/PHINDaccess_FUNOMICs
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jdreo/paradiseo
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tru/BGA2019
Bioinformatics and Genome Analyses 2019 - http://meetings.embo.org/event/19-genome-analyses Program at https://webext.pasteur.fr/tekaia/BCGA2019/BCGA2019_Prog.html Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html
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mouselab/stuart
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hub/django-autocomplete-multi-models
An app that index word used in text field across multiple model, and expose them to be searched.
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hub/BioinfOMICs
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bia/kinect-driver
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bli/libcelegans
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iah-public/2d-frames-registration-with-bunwarpj
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dbikard/badSeed_public
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gmillot/slivar_vcf_extraction
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bia/apache-httpclient
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bia/icy-insubstantial
Insubstantial project (https://github.com/Insubstantial) clone for Icy (fixes + minors customizations). Previous version of the repository can be found at https://github.com/Icy-imaging/Icy-Insubstantial
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statistical-genetics/PaintorPrep
scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)
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nyx/MaggotUBA-adapter
Interface between MaggotUBA and the Nyx tagging UI
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haisslab/analysis-packages/Inflow
General python code for analysis pipeline
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iah-public/hpyloridegradosomeanalysis
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iah-public/CellContactAnalyzer
A Fiji tool to detect, track and analyze cell-to-cell contacts. First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"
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ida-public/dnabarcodecompatibility
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ida-public/musical-success
Billboard 200: The lessons of musical success in the US
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mdm-lab/website
[](https://archive.softwareheritage.org/browse/origin/?origin_url=https://gitlab.pasteur.fr/mdm-lab/website)
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mmmi-pasteur/covidonneur
Codes and Data for the paper “SARS-CoV-2 IgG seroprevalence surveys in blood donors before the vaccination campaign, France 2020-2021”.
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mmmi-pasteur/sars-cov-2-epidemics-in-partially-vaccinated-populations
Repository containing code and data for the paper by Bosetti et al. "Epidemiology and control of SARS-CoV-2 epidemics in partially vaccinated populations: a modeling study applied to France"
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mmmi-pasteur/covidvaccinationstrategies-france
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bia/jama-for-icy
Jama Matrix Package library for Icy
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bia/jfree-common
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bia/cs-denoising
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bli/libdeseq
Some helpers to call DESeq2 using rpy2 in python.
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iah-public/ltravier_brain-ventricles-volume-measurement
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iah-public/clostridioides-difficile-binary-toxin-cdt-induces-biofilm-like-persisting-microcolonies
Python code for the image analysis performed for the paper "Clostridioides difficile binary toxin CDT induces biofilm-like persisting microcolonies" J. MEZA TORRES et al.
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