gitlab.inria.fr / InBio 1 Dépôt
Experimental and computational methods for modeling cellular processes
InBio/Public/yeastcybersecretion
Code associated to the manuscript "Maximizing protein production by keeping cells at optimal secretory stress levels using real-time control approaches", by Sosa-Carrillo and colleagues, bioRxiv, 10.1101/2022.11.02.514931. The code can be used to analyze the raw data and generate figures for the manuscript. The raw data can be found on Zenodo at doi:10.5281/zenodo.7418639
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InBio/Public/captain-workflow-manager
Run and manage jobs that depend on each other on a variety of backends.
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InBio/Public/fwd_ad
Fwd:AD is a Rust library (crate) to perform forward auto-differentiation, with a focus on empowering its user to manage memory location and minimize copying.
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InBio/Public/cvode-rust-wrap
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InBio/Public/predicting-selection-effects
Code used for the analysis of raw data, model simulation and to generate figures for the article "Using single-cell models to predict the functionality of complex synthetic circuits at the population scale" (2021).
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InBio/Public/YeastOptogeneticDifferentiation_YODA
Code used for the analysis of raw data and generate figures for the article "A light tunable differentiation system for the creation and control of consortia in yeast" (2021).
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InBio/Public/hydriver
Hydra LMT200 C++ driver for Micromanager
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