forgemia.inra.fr
formation/formation-python-inrae
Fichiers de la formation Python, Inra de Bourgogne Franche-Compté. Formateur : Arnaud Mounier.
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in-sylva-development/in-sylva.source.manager
Project dedicated to source managment. It allows user to upload data in the system
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in-sylva-development/in-sylva.gatekeeper
Project used to manage security for In-Sylva Information System
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gdtpyr/notice_mesolr
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csopra/csoprat_packages_test
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biocom/soil-fungal-bacterial-ratio-across-france
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elisemaigne/slides/presentation_sk8_miat
https://elisemaigne.pages.mia.inra.fr/slides/presentation_sk8_miat/
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ml_apt/g2f_challenge
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chemhouse/r/rchemo
R package for regression and discrimination, with special focus on chemometrics and high-dimensional data
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umr-astre/training/crashbayes
Crash Course On Bayesian Regression Modelling. https://umr-astre.pages.mia.inra.fr/training/crashbayes/
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metexplore/cbm/samba-project/sambar-shiny
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inter_cati_omics/hackathon_inter_cati_decembre_2022/Atelier_1_Snakemake_Singularity_Pangenome/containers/vg_1.39
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umr-ispa/formation-linux-et-dev
Support de présentation pour les sessions de formation bases de Linux et bonnes pratiques de développement informatique
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gryc-data/torulaspora_microellipsoides-clib_830
Torulaspora microellipsoides CLIB 830 complete genome and annotation data.
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gryc-data/tetrapisispora_blattae-cbs_6284
Tetrapisispora blattae CBS 6284 complete genome and annotation data.
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gryc-data/lachancea_quebecensis-cbs_14088
Lachancea quebecensis CBS 14088 complete genome and annotation data.
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gryc-data/lachancea_nothofagi-cbs_11611
Lachancea nothofagi CBS 11611 complete genome and annotation data.
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gryc-data/lachancea_fantastica-cbs_6924
Lachancea fantastica CBS 6924 complete genome and annotation data.
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chemhouse/octave/tbjmr/ncovsel
Variable Selection in N-Way data
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flomics/rflomics
Package R with a shiny interface to run an interactive differential gene/region expression analysis.
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sk8/sk8-apps/get-trix/matrixapp
Link to running app: https://matrixapp.sk8.inrae.fr MATRiX is a shiny application dedicated to Mining and Analysis of Transcriptomics data using common biostatistic result files (statistical test result table, normalised data table and samples-groups information). This application helps biologists to perform data exploration with PCA, Venn diagrams, StripCharts, volcanoplots, and Heatmap clustering of genes lists (selecting statistical thresholds) and functional enrichment analyses using a connection to enrichr. https://matrixapp.sk8.inrae.fr
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sk8/sk8-apps/tbi/graphstatsr
GraphstatsR est une application permettant le l'analyses de données de quantification métabolomiques prétraitées (MS, RMN). Elle permet la génération d'analyse descriptive (ACP), de représentations graphiques type boxplot avec tests statistiques associées, cela avec une interactivité permettant à l'utilisateur d'ajuster au mieux les analyses. Cette application peut traiter des données issues d'autres méthodes à condition de fournir des fichiers d'entrée au bon format. https://graphstatsr.sk8.inrae.fr
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metexplore/cbm/dexom
Diversity-based enumeration of optimal context-specific metabolic networks
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gryc-data/eremothecium_gossypii-atcc_10895
Eremothecium gossypii ATCC 10895 complete genome and annotation data.
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gryc-data/debaryomyces_hansenii-cbs_767
Debaryomyces hansenii CBS 767 complete genome and annotation data.
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record/RECORD
Code storage Area of the RECORD Project packages.
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singularity/prebuilt/miniconda3-py37
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workshop-metabolism-modelling/2024-edition
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genotoul-biostat/website
Dépôt du site internet de la plateforme Genotoul-biostat
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mesuredeau/height-calculator
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inter_cati_omics/hackathon_inter_cati_omics_roscoff_2023/atelier_inference_reseaux
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biocom/mfd-targets-pipeline
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dynafor/webapps/eagle-hedges
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gt-maiia/mifobio_stardist
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metexplore/cbm/samba-project/sambaflux
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abisoft-gqe/biomercator
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tropo-group/tropolink-usecases
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biosp/juliette-legrand
https://biosp.pages.mia.inra.fr/juliette-legrand
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metabohub/web-components/mth-grid
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urep/soere-pp/ec-data-processing
Scripts for data manipulation and post-processing of Eddy covariance data
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sk8/sk8-apps/gqe/shinyteach/gqe-recomblines
https://gqe-recomblines.sk8.inrae.fr
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sk8/sk8-apps/gqe/shinyteach/gqe-chi2
https://gqe-chi2.sk8.inrae.fr
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sk8/sk8-apps/gqe/shinyteach/gqe-echantillon-quanti
https://gqe-echantillon-quanti.sk8.inrae.fr
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inca-hsmm/hsmmpp
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umr-astre/presentations/reproducible-research-in-r
Slides for the session on Reproducible Research in R at MOOD's summer school 2022. https://umr-astre.pages.mia.inra.fr/presentations/reproducible-research-in-r Recording: https://av.tib.eu/media/13751
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gaev/packer/vagrant-cloud_api
Tool to submit a Vagrant box using the Vagrant Cloud API.
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siriusquality/sqcode/siriusquality-bioma-maizelai-component
BioMa Component of Maize Leaf Area Index in Sirius Quality
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gryc-data/kluyveromyces_lactis-nrrl_y-1140
Kluyveromyces lactis NRRL Y-1140 complete genome and annotation data.
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in-sylva-development/in-sylva.portal
Used to manage account, policies and sources. Access reserved to insylva administrators and source managers
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gaev/usecases/macosr
Creation and provisioning a Mac OS VirtualBox with R4 tools chain and use it as a GitLab Runner.
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vasa/illuminametabarcoding
Le projet IlluminaMetabarcodingPipeline a pour but de traiter des séquences issues de séquençage à très haut débit Illumina MySeq et d'en découvrir des modèles
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gryc-data/lachancea_kluyveri-nrrl_y-1265
Lachancea kluyveri NRRL Y-1265 complete genome and annotation data.
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gryc-data/lachancea_fermentati-cbs_6772
Lachancea fermentati CBS 6772 complete genome and annotation data.
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gaev/packer/macos
Création et configuration de MV sous Mac OS.
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umr-astre/training/forgemia-tutorial
A self-paced course on git and Forgemia.
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chemhouse/octave/tbjmr/CovSel
Covsel related functions and data
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siriusquality/sqcode/SiriusQuality-BioMa-Phenology-Component
BioMa component of the phenology model in SiriusQuality2
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gryc-data/lachancea_mirantina-cbs_11717
Lachancea mirantina CBS 11717 complete genome and annotation data.
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ecoelec/communication/ecoelec
https://ecoelec.pages.mia.inra.fr/communication/ecoelec
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emfeed1/vasa/vasa-aleph-zero
Le projet IlluminaMetabarcodingPipeline a pour but de traiter des séquences issues de séquençage à très haut débit Illumina MySeq et d'en découvrir des modèles
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record-open-archives/ascrom
pubilc repository for the ASCROM crop model developped during the ATCHA project model documentation: https://record-open-archives.pages.mia.inra.fr/ascrom/
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record-open-archives/mf1_2
pubilc repository for the MF1_2 farm model developped during the ATCHA project model documentation: https://record-open-archives.pages.mia.inra.fr/mf1_2/
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singularity/bioinfo/bamUtil
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cropmetapop/cmpanalyzer
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