forgemia.inra.fr
git-gitlab-paca/support-de-formation
[Présentation en ligne sur GitLab Pages](https://git-gitlab-paca.pages.mia.inra.fr/support-de-formation/)
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 26 - Forks: 4
genotoul-bioinfo/metagwgs
metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.
Last synced at: over 1 year ago - Stars: 9 - Forks: 2
adminforgemia/doc-public
Dépôt public de documentations pour les utilisateurs de ForgeMIA. Contact : support-forgemia@inra.fr
Last synced at: over 1 year ago - Stars: 8
formationcalcul2023/formation-singularity
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 0
formationcalcul2022/formation-slurm
Formation et tp SLURM pour la FCC 2022 à Montpellier
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 5 - Forks: 0
urgi-is/faidare
FAIDARE: FAIR Data-finder for Agronomic Research It provides web services (based on the [BrAPI standard](https://brapi.org)) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.
Last synced at: over 1 year ago - Stars: 5 - Forks: 0
genotoul-bioinfo/use-nextflow-nfcore-course
Cours accessible à https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/
Last synced at: over 1 year ago - Stars: 4 - Forks: 1
urgi-is/data-discovery
DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters. This tool is expected to be easily customizable for specific filters, environments, or data schemas.
Last synced at: over 1 year ago - Stars: 4 - Forks: 0
gaev/gaev
Le projet Gestion Automatique d'Environnement Virtuel.
Last synced at: over 1 year ago - Stars: 4 - Forks: 0
miat-com/miat_website
[Site web de MIAT](https://miat.inrae.fr), avec wowchemy (hugo). Pour voir vos modifications après un commit, la preview du site web est là : https://miat-com.pages.mia.inra.fr/miat_website Assignez vos merges requests pour qu'elles soient passés sur le "vrai" site web, à votre correspondant d'équipe : @benjamin.linard, @gauthier.quesnel, @philippe.bordron ou @rtrepos
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 4
hackathon-portail-calcul/hackathon_organisation
Last synced at: over 1 year ago - Stars: 4 - Forks: 1
inter_cati_omics/hackathon_octobre2021/hackathon_datascience_2021
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 1
pepragrodiv/pangenome/pansel
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0
metexplore/met4j
Java library for metabolic networks
Last synced at: over 1 year ago - Stars: 3 - Forks: 2
urep/dev_utils/gitlab-ci-templates
Some templates useful for Gitlab CI Yaml scripts.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0
genotoul-bioinfo/dgenies
Dotplot large Genomes in an Interactive, Efficient and Simple way
Last synced at: over 1 year ago - Stars: 3 - Forks: 0
formationcalcul2022/formation-singularity
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 1
umr-tetis/guides
__[Website](https://umr-tetis.pages.mia.inra.fr/guides)__
Last synced at: over 1 year ago - Stars: 3
dipso/thesaurus-inrae
Exploitation et maintenance du thésaurus INRAE, thésaurus ouvert et partagé couvrant les domaines de recherche d’INRAE. Il sert de référentiel au sein de l’institut pour indexer et annoter des documents, pages web, descriptions d’activités, jeux de d
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 1
anaee-dev/si-ore-v2
# Projet de la version V2 de l'application des ORE. Le projet est constitué de 2 sous projet : - La partie serveur qui fournit les web services de l'application - La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service
Last synced at: over 1 year ago - Stars: 3 - Forks: 0
formationcalcul2023/initiation-git
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0
beyond/remote_sensing_notebooks
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
elisemaigne/2021_git
Présentation de git et de son écosystème dans le cadre des rencontres ingénieurs statisticiens de Toulouse (dec. 2021).
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 2
formationcalcul2023/formation-slurm
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1
bios4biol/workflows
List of workflows (nextflow/snakemake) tested for Genotoul Cluster.
Last synced at: over 1 year ago - Stars: 2 - Forks: 2
get-nextflow-ngl-bi/wf-illumina-nf
Pipeline Nextflow
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
migale/easy16s
Server : https://shiny.migale.inrae.fr/app/easy16S | Doc : https://easy16s.migale.inrae.fr/
Last synced at: over 1 year ago - Stars: 2 - Forks: 0
public-pgba/genofig
GenoFig is a tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It was designed to be as easy to use as possible for biologists.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
omnicrobe/omnicrobe_web
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1
umrf/ranomaly
https://umrf.pages.mia.inra.fr/ranomaly/
Last synced at: over 1 year ago - Stars: 2 - Forks: 2
caf-forge/cafe-forge
Le camp de base du Café Forge
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
asm4pg/GenomAsm4pg
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
urgi-anagen/panTEannot
panTEannot serially annotates transposable elements from multiple genomes using a common reference library. The annotation is a light version of TEannot from REPET package. These annotations can be used as input for the panREPET tool.
Last synced at: over 1 year ago - Stars: 2 - Forks: 0
work4graph/bootcamp-neo4j-2022
Organisation d'un bootcamp autour de l'intégration et la visualisation de données avec Neo4J, adossé en amont d'une formation Neo4J en ligne. Site web : https://work4graph.pages.mia.inra.fr/bootcamp-neo4j-2022/
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
abisoft-gqe/diverciland
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
irhs-bioinfo/bisepsgui
Electron Desktop App For Bisulfite Sequencing Processing Software (BiSePS)
Last synced at: over 1 year ago - Stars: 2 - Forks: 0
inter_cati_omics/hackathon_octobre2021/atelier_repro
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
eq-record/record-team
A static [web site](https://eq-record.pages.mia.inra.fr/record-team/) to present the team
Last synced at: over 1 year ago - Stars: 2 - Forks: 3
seqoccin/hifi-metabarcoding-analysis
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
orfeo-toolbox/pyotb
pyotb is a library that enables easy use of the Orfeo Tool Box (OTB) in Python
Last synced at: over 1 year ago - Stars: 2 - Forks: 0
umrf/anomaly
Ensemble de scripts utilisés au LRF pour traiter les données d'amplicon sequencing 16S et ITS.
Last synced at: over 1 year ago - Stars: 2 - Forks: 0
cati-prosodie/fair4rs-fr
Traduction française des FAIR4RS Principles (voir README)
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
umr-gdec/magatt
Pipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.
Last synced at: over 1 year ago - Stars: 2 - Forks: 0
abisoft-gqe/thaliadb
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
urgi-anagen/panREPET
panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.
Last synced at: over 1 year ago - Stars: 2 - Forks: 0
urep/models/modvege/modvege-r
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
umrf/utopia
UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase
Last synced at: over 1 year ago - Stars: 1 - Forks: 0
urgi-anagen/te_finder
A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
Last synced at: over 1 year ago - Stars: 1 - Forks: 0
dipso/bridge-datainrae-nextcloud
App Nextcloud permettant de publier des fichiers du Nextcloud INRAE vers DataINRAE
Last synced at: over 1 year ago - Stars: 1 - Forks: 0
formationcalcul2023/formation-linux
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
elisemaigne/formation_shiny
Supports pour la formation shiny - Plateforme de Biostatistique – Génopole Toulouse Midi-Pyrénées
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
urep/dev_utils/r_utils/r4urep
An R package with globally useful function for UREP R developments
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
bios4biol/Help4MultiQC
https://bios4biol.pages.mia.inra.fr/Help4MultiQC
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1
dipso/tsv2properties
Génération de fichiers .properties de traduction pour Dataverse à partir de fichiers de métadonnées .tsv"
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
metexplore/met4j-singularity
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
dipso/graspos
Contribution à la réalisation du "pilote" INRAE, dans le cadre du programme européen GraspOS
Last synced at: over 1 year ago - Stars: 1 - Forks: 0
sk8/sk8-apps/ettis/smgbl-pcdep
Application de reporting / datavisualisation qui a pour objectif de fournir une série d’indicateurs visuels et synthétiques représentatifs des volumes d’interventions sur les postes de secours ayant pris part au projet SWYM pour la collecte numérique de données via ODK. https://smgbl-pcdep.sk8.inrae.fr
Last synced at: over 1 year ago - Stars: 1 - Forks: 0
dipso/eosc-pillar/dataverse-jupyterhub-connector
Connecteur entre dataverse et jupyterhub
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
reversaal/nature-based-solutions/multisource/tw.dataset
Last synced at: over 1 year ago - Stars: 1 - Forks: 0
metexplore/cbm/fvabiomarkers
Juliette's internship project
Last synced at: over 1 year ago - Stars: 1 - Forks: 0
agroclim/Indicators/OutilsPourIndicateurs/packagesr/peinnar
Last synced at: over 1 year ago - Stars: 1 - Forks: 0
stacomi/stacomir
Fish migration monitoring, database connection and treatment
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
stacomi/stacomi_db
Scripts related with database development in stacomi.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
pole-migrateurs/eda/dbeel
dbeel integration
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
dipso/INRAE_BeamerTheme
Thème INRAE pour faire des présentations en latex beamer
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
umr-gdec/nf-remapmarkers
scripts to remap markers as pairs of bait sequences or context sequences.
Last synced at: over 1 year ago - Stars: 1 - Forks: 1
pepi-atelier-singularity/atelier-singularity
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
nmf4metagenomics/pynmf
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
game-theory-tools-group/gtnash
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 4
stacomi/stacomirtools
Database connection utilities, RODBC and pool
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
sk8/sk8-apps/miat/atcha/mf-12-1-ha
Exploration interactive de scenario de simulation du modèle MF1.2-1ha du projet Atcha. [https://mf-12-1-ha.sk8.inrae.fr/](https://mf-12-1-ha.sk8.inrae.fr/) | https://shiny.sk8.inrae.fr/app/atcha-mf-12-1-ha | https://shiny.sk8.inrae.fr/app_direct/atcha-mf-12-1-ha
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
sk8/sk8-apps/metexplore/samba
SAMBA (R) est une interface pour analyser les résultats de sampling de réseaux métaboliques générés à partir de SAMBApy sous Python. Elle est composée d'une une partie comparaison (calcul de différence) et une partie visualisation graphique des résultats. https://samba.sk8.inrae.fr/
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
genotoul-bioinfo/metagwgs-test-datasets
Repository containing input and output datasets to perform tests on metaGWGS
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
get-plage_public/ngs_tools
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
umr-astre/guidelines/doc-references
Dépôt publique de documentation de référence sur logiciels, méthodes ou pratiques pour les chercheurs, collaborateurs et étudiants de l'UMR ASTRE. Contact : facundo.munoz@cirad.fr
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1
inter_cati_omics/hackathon_octobre2021/django-vue-interface
Interface en vue.js pour l'atelier Django-vue 2021.
Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
